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Day 1: Friday, 9 July 2010
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8:45 - 9:00
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Welcome
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9:00 - 10:15
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1.1
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David Haussler
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Keynote
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1.2
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Christian Gilissen
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Prioritization of pathogenic variants for monogenic diseases
using targeted and exome resequencing data
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10:15 - 10:45
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Coffee Break
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10:45 - 12:30
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2.1
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Vikas Bansal
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Accurate genotyping of indels from population-scale short read
sequence data
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2.2
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Wolfgang Gerlach
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Taxonomic Classification of Metagenomic Reads with CARMA3
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2.3
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Sharmila Mande
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Use of multiple compositional filters for rapid and accurate
taxonomic classification of metagenomic sequences
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2.4
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Or Zuk
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Detection of Rare-Alleles And Their Carriers Using Compressed
Se(que)nsing
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2.5
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Tianjiao Chu
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Statistical model for whole genome sequencing and its
application to minimally invasive diagnosis of fetal genetic disease
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12:30 - 1:45
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Lunch
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1:45 - 3:30
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3.1
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Steffen Heber
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Quantative RNA-Seq to Investigate the Role of Alternative
Splicing in Plant Immune Response.
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3.2
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Yin Hu
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A Probabilistic Framework for Accurate Detection of Gene Fusion
Events with Paired-End RNA-seq Reads
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3.3
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Andrew McPherson
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Gene fusion discovery in paired end RNA-Seq data with
application to ovarian cancer
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3.4
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Oliver Stegle
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Statistical Tests for Detecting Differential RNA-Transcript
Expression from Read Counts
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3.5
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Billy Chang
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A Regression Approach to Fragmentation Bias Correction for
Isoform Quantification in RNA-Seq.
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3:30 - 4:00
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Coffee Break
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4:00 - 5:45
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4.1
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Aaron Klammer
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De novo assembly of Pacific Biosciences SMRT DNA sequences
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4.2
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Ole Schulz-Trieglaff
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Assembling genomic variants and baterial genomes using Illumina
Genome Analyzer data
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4.3
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Moran Yassour
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De novo assembly of RNAseq for transcriptome reconstruction and characterization
from yeasts to human
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4.4
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Iman Hajirasouliha
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Detection of locus and content of novel sequence insertions
using paired-end next-generation sequencing
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4.5
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Gunnar Ratsch
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Online Quantative Transcriptome Analysis
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Dinner
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Day 2: Saturday, 10 July 2010
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8:30 - 10:15
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5.1
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Valentina Boeva
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Control-free prediction of copy number alterations in
deep-sequencing data using normalization on GC-content
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5.2
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Anamaria Crisan
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Informing the inference of single nucleotide variants with copy
number alteration annotations reveals novel somatic mutations in resequenced
cancer genomes
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5.3
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Anna Ritz
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Structural Variation Analysis with Strobe Reads
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5.4
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Jochen Blom
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Using GPU programming for short read mapping
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5.5
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Gunnar Ratsch
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RGASP Evaluation of RNA-Seq Read Alignment Algorithms
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10:15 - 10:45
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Coffee Break
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10:45 - 12:30
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6.1
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Sven Rahmann
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Deep microRNA sequencing reveals differential expression in
favorable versus unfavorable neuroblastoma tumors
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6.2
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Dale Webster
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Analysis Methods for Directly Detecting DNA Methylation Through
Single-Molecule Real-Time Sequencing
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6.3
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Evan Johnson
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Probabilistic SNP mapping using GNUMAP-SNP
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6.4
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Chuck Tweedy
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The effect on sequencing accuracy of DNA polymerase kinetics in
real-time, single-molecule, sequence-by-synthesis methods (3rd generation)
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6.5
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Leena Salmela
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Correction of sequencing errors in a mixed set of reads
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12:30 - 1:45
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Lunch
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1:45 - 3:30
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7.1
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Marc Fiume
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Savant: Genome Browser for High Throughput Sequencing Data
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7.2
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Mark Chaisson
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Mapping reads with insertion and deletion error using BLASR
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7.3
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John Carpten
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Keynote
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3:30 - 4:00
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Coffee Break
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4:00 - 6:00
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Poster Session
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